File List

Here is a list of all files with brief descriptions:

• dir source
  • dir comp-rational_data
    • dir src
      • file comp_rational_data.c A module for compute rational tangle data: fraction, algebraic equivlance, and parity.
      • file comp_rational_data.h A module for compute rational tangle data: fraction, algebraic equivlance, and parity.
    • dir test
      • file test_computation_rational_data.c
  • dir comp-rlitt_grafting
    • dir src
      • file comp_rlitt_grafting.c A rlitt_grafting module.
      • file comp_rlitt_grafting.h A module for compute rlitt_grafting.
    • dir test
      • dir tests
        • dir compute
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • dir config
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • dir results
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
      • dir utils
        • file utils.c
        • file utils.h
      • file test_comp_rlitt_grafting.c
  • dir comp-rlitt_positivity
    • dir src
      • file comp_rlitt_positivity.c A rlitt_positivity module.
      • file comp_rlitt_positivity.h A module for compute rlitt_positivity.
    • dir test
      • dir tests
        • dir compute
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • dir config
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • dir results
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
      • dir utils
        • file data.c
        • file data.h
      • file test_comp_rlitt_positivity.c
  • dir comp-rlitt_pure_vignette
    • dir src
      • file comp_rlitt_pure_vignette.c A rlitt_pure_vignette module.
      • file comp_rlitt_pure_vignette.h A module for compute rlitt_pure_vignette.
    • dir test
      • dir tests
        • dir compute
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • dir config
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • dir results
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
      • dir utils
        • file data.c
        • file data.h
      • file test_comp_rlitt_pure_vignette.c
  • dir comp-wptt_canonicity
    • dir src
      • file comp_wptt_canonicity.c A module for computing the canonicity of a WPTT.
      • file comp_wptt_canonicity.h A module for compute wptt_canonicity.
    • dir test
      • dir tests
        • dir compute
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • dir config
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • dir results
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
      • dir utils
        • file data.c
        • file data.h
      • file test_comp_wptt_canonicity.c
  • dir comp-wptt_vertex_canonicity
    • dir src
      • file comp_wptt_vertex_canonicity.c
      • file comp_wptt_vertex_canonicity.h A module for computing the canonicity of a vertex of a wptt.
    • dir test
      • dir tests
        • dir compute
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • dir config
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • dir results
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
      • file test_comp_wptt_vertex_canonicity.c
  • dir defs
    • dir computation_defs
      • file computation_defs.h Common definitions for computation objects.
    • dir generator_defs
      • file generator_defs.h Common definitions for generator objects.
    • dir mutator_defs
      • file mutator_defs.h
    • dir notation_defs
      • file notation_defs.h Common definitions for notation objects.
    • dir storage_defs
      • file storage_defs.h Common definitions for store-storage_interface objects.
    • file tang_defs.h Common definitions for the tanglenomicon project.
  • dir gen-montesinos
    • dir src
      • file generator_montesinos.c A module for generating montesinos tangles.
      • file generator_montesinos.h A module for generating montesinos tangles.
    • dir test
      • file test_generator_montesinos.c
  • dir gen-rational
    • dir src
      • file generator_rational.c A module for generating rational tangles.
      • file generator_rational.h A module for generating rational tangles.
    • dir test
      • file test_generator_rational.c
  • dir gen-rlitt
    • dir src
      • file generator_rlitt.c generator module for rlitt.
      • file generator_rlitt.h Generator module for rlitt generator.
    • dir test
      • dir tests
        • dir config
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • dir generate
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • file test_low_crossing.c
        • file test_low_crossing.h
      • dir utils
        • file utils.c
        • file utils.h
      • file test_generator_rlitt.c
  • dir mut-rlitt_ringshift
    • dir src
      • file mut_rlitt_ringshift.c A rlitt_ringshift module.
      • file mut_rlitt_ringshift.h A module for compute rlitt_ringshift.
    • dir test
      • dir tests
        • dir config
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • dir mutate
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
      • dir utils
        • file utils.c
        • file utils.h
      • file test_mut_rlitt_ringshift.c
  • dir mut-wptt_f_moves
    • dir src
      • file mut_wptt_f_moves.c Mutates a tree by one of the \(F\_i\) moves.
      • file mut_wptt_f_moves.h Mutates a tree by one of the \(F\_i\) moves.
    • dir test
      • dir tests
        • dir config
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • dir mutate
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
      • dir utils
        • file utils.c
        • file utils.h
      • file test_mut_wptt_f_moves.c
  • dir note-algebraic_tangle_tree
    • dir src
      • file notation_att.c Notation module for twist vectors.
      • file notation_att.h Notation module for twist vector notation.
    • dir test
      • file test_notation_att.c
  • dir note-plpath
    • dir src
      • file notation_plpath.c Notation module for PL paths.
      • file notation_plpath.h Notation module for PL paths.
    • dir test
      • dir tests
        • dir decode
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • dir encode
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • file turn_around_test.c
        • file turn_around_test.h
      • dir utils
        • file utils.c
        • file utils.h
      • file test_notation_plpath.c
  • dir note-twist_vector
    • dir src
      • file notation_tv.c Notation module for twist vectors.
      • file notation_tv.h Notation module for twist vector notation.
    • dir test
      • file test_notation_twist_vec.c
  • dir note-wptt
    • dir src
      • file notation_wptt.c Notation module for weighted planar tangle trees.
      • file notation_wptt.h Notation module for Arborescent Weighted Planar Tree Notation (wptt) notation.
    • dir test
      • dir tests
        • dir decode
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • dir encode
          • file negative_tests.c
          • file negative_tests.h
          • file positive_tests.c
          • file positive_tests.h
        • file turn_around_test.c
        • file turn_around_test.h
      • dir utils
        • file utils.c
        • file utils.h
      • file test_notation_wptt.c